CDS

Accession Number TCMCG007C28074
gbkey CDS
Protein Id XP_018514209.2
Location complement(join(17148439..17148451,17148723..17148782,17148863..17149178,17149287..17149395,17149474..17150478,17150546..17150733,17150926..17151046,17151146..17151316,17151463..17151561,17151631..17151875,17151965..17152199))
Gene LOC103865199
GeneID 103865199
Organism Brassica rapa

Protein

Length 853aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA249065
db_source XM_018658693.2
Definition protein RRP6-like 3 isoform X3 [Brassica rapa]

EGGNOG-MAPPER Annotation

COG_category J
Description HRDC domain
KEGG_TC 3.A.3
KEGG_Module -
KEGG_Reaction -
KEGG_rclass -
BRITE ko00000        [VIEW IN KEGG]
ko01000        [VIEW IN KEGG]
KEGG_ko ko:K12951        [VIEW IN KEGG]
EC -
KEGG_Pathway -
GOs GO:0000175        [VIEW IN EMBL-EBI]
GO:0000178        [VIEW IN EMBL-EBI]
GO:0000460        [VIEW IN EMBL-EBI]
GO:0000785        [VIEW IN EMBL-EBI]
GO:0000956        [VIEW IN EMBL-EBI]
GO:0003674        [VIEW IN EMBL-EBI]
GO:0003824        [VIEW IN EMBL-EBI]
GO:0004518        [VIEW IN EMBL-EBI]
GO:0004527        [VIEW IN EMBL-EBI]
GO:0004532        [VIEW IN EMBL-EBI]
GO:0004540        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005634        [VIEW IN EMBL-EBI]
GO:0005694        [VIEW IN EMBL-EBI]
GO:0005730        [VIEW IN EMBL-EBI]
GO:0005737        [VIEW IN EMBL-EBI]
GO:0005829        [VIEW IN EMBL-EBI]
GO:0006139        [VIEW IN EMBL-EBI]
GO:0006364        [VIEW IN EMBL-EBI]
GO:0006396        [VIEW IN EMBL-EBI]
GO:0006401        [VIEW IN EMBL-EBI]
GO:0006402        [VIEW IN EMBL-EBI]
GO:0006403        [VIEW IN EMBL-EBI]
GO:0006725        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0007549        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0008298        [VIEW IN EMBL-EBI]
GO:0008334        [VIEW IN EMBL-EBI]
GO:0008408        [VIEW IN EMBL-EBI]
GO:0009048        [VIEW IN EMBL-EBI]
GO:0009056        [VIEW IN EMBL-EBI]
GO:0009057        [VIEW IN EMBL-EBI]
GO:0009889        [VIEW IN EMBL-EBI]
GO:0009890        [VIEW IN EMBL-EBI]
GO:0009892        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0010467        [VIEW IN EMBL-EBI]
GO:0010468        [VIEW IN EMBL-EBI]
GO:0010556        [VIEW IN EMBL-EBI]
GO:0010558        [VIEW IN EMBL-EBI]
GO:0010605        [VIEW IN EMBL-EBI]
GO:0010629        [VIEW IN EMBL-EBI]
GO:0010639        [VIEW IN EMBL-EBI]
GO:0016070        [VIEW IN EMBL-EBI]
GO:0016071        [VIEW IN EMBL-EBI]
GO:0016072        [VIEW IN EMBL-EBI]
GO:0016075        [VIEW IN EMBL-EBI]
GO:0016787        [VIEW IN EMBL-EBI]
GO:0016788        [VIEW IN EMBL-EBI]
GO:0016796        [VIEW IN EMBL-EBI]
GO:0016896        [VIEW IN EMBL-EBI]
GO:0019219        [VIEW IN EMBL-EBI]
GO:0019222        [VIEW IN EMBL-EBI]
GO:0019439        [VIEW IN EMBL-EBI]
GO:0022613        [VIEW IN EMBL-EBI]
GO:0031323        [VIEW IN EMBL-EBI]
GO:0031324        [VIEW IN EMBL-EBI]
GO:0031326        [VIEW IN EMBL-EBI]
GO:0031327        [VIEW IN EMBL-EBI]
GO:0031974        [VIEW IN EMBL-EBI]
GO:0031981        [VIEW IN EMBL-EBI]
GO:0032204        [VIEW IN EMBL-EBI]
GO:0032205        [VIEW IN EMBL-EBI]
GO:0032210        [VIEW IN EMBL-EBI]
GO:0032211        [VIEW IN EMBL-EBI]
GO:0032879        [VIEW IN EMBL-EBI]
GO:0032991        [VIEW IN EMBL-EBI]
GO:0033036        [VIEW IN EMBL-EBI]
GO:0033043        [VIEW IN EMBL-EBI]
GO:0033044        [VIEW IN EMBL-EBI]
GO:0034470        [VIEW IN EMBL-EBI]
GO:0034641        [VIEW IN EMBL-EBI]
GO:0034655        [VIEW IN EMBL-EBI]
GO:0034660        [VIEW IN EMBL-EBI]
GO:0034661        [VIEW IN EMBL-EBI]
GO:0035327        [VIEW IN EMBL-EBI]
GO:0040029        [VIEW IN EMBL-EBI]
GO:0042254        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043228        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0043232        [VIEW IN EMBL-EBI]
GO:0043233        [VIEW IN EMBL-EBI]
GO:0043632        [VIEW IN EMBL-EBI]
GO:0043633        [VIEW IN EMBL-EBI]
GO:0043634        [VIEW IN EMBL-EBI]
GO:0044085        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044248        [VIEW IN EMBL-EBI]
GO:0044260        [VIEW IN EMBL-EBI]
GO:0044265        [VIEW IN EMBL-EBI]
GO:0044270        [VIEW IN EMBL-EBI]
GO:0044422        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044427        [VIEW IN EMBL-EBI]
GO:0044428        [VIEW IN EMBL-EBI]
GO:0044444        [VIEW IN EMBL-EBI]
GO:0044446        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0045934        [VIEW IN EMBL-EBI]
GO:0046483        [VIEW IN EMBL-EBI]
GO:0046700        [VIEW IN EMBL-EBI]
GO:0048519        [VIEW IN EMBL-EBI]
GO:0048523        [VIEW IN EMBL-EBI]
GO:0050789        [VIEW IN EMBL-EBI]
GO:0050794        [VIEW IN EMBL-EBI]
GO:0051052        [VIEW IN EMBL-EBI]
GO:0051053        [VIEW IN EMBL-EBI]
GO:0051128        [VIEW IN EMBL-EBI]
GO:0051129        [VIEW IN EMBL-EBI]
GO:0051171        [VIEW IN EMBL-EBI]
GO:0051172        [VIEW IN EMBL-EBI]
GO:0051179        [VIEW IN EMBL-EBI]
GO:0051641        [VIEW IN EMBL-EBI]
GO:0060255        [VIEW IN EMBL-EBI]
GO:0065007        [VIEW IN EMBL-EBI]
GO:0065008        [VIEW IN EMBL-EBI]
GO:0070013        [VIEW IN EMBL-EBI]
GO:0070727        [VIEW IN EMBL-EBI]
GO:0071025        [VIEW IN EMBL-EBI]
GO:0071027        [VIEW IN EMBL-EBI]
GO:0071028        [VIEW IN EMBL-EBI]
GO:0071029        [VIEW IN EMBL-EBI]
GO:0071030        [VIEW IN EMBL-EBI]
GO:0071033        [VIEW IN EMBL-EBI]
GO:0071034        [VIEW IN EMBL-EBI]
GO:0071035        [VIEW IN EMBL-EBI]
GO:0071043        [VIEW IN EMBL-EBI]
GO:0071044        [VIEW IN EMBL-EBI]
GO:0071046        [VIEW IN EMBL-EBI]
GO:0071048        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0071840        [VIEW IN EMBL-EBI]
GO:0080090        [VIEW IN EMBL-EBI]
GO:0090304        [VIEW IN EMBL-EBI]
GO:0090305        [VIEW IN EMBL-EBI]
GO:0090501        [VIEW IN EMBL-EBI]
GO:0090503        [VIEW IN EMBL-EBI]
GO:0140098        [VIEW IN EMBL-EBI]
GO:1901360        [VIEW IN EMBL-EBI]
GO:1901361        [VIEW IN EMBL-EBI]
GO:1901575        [VIEW IN EMBL-EBI]
GO:1902494        [VIEW IN EMBL-EBI]
GO:1904356        [VIEW IN EMBL-EBI]
GO:1904357        [VIEW IN EMBL-EBI]
GO:1904872        [VIEW IN EMBL-EBI]
GO:1905354        [VIEW IN EMBL-EBI]
GO:2000112        [VIEW IN EMBL-EBI]
GO:2000113        [VIEW IN EMBL-EBI]
GO:2000278        [VIEW IN EMBL-EBI]
GO:2000279        [VIEW IN EMBL-EBI]
GO:2001251        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGGTGGTCAACGAAAAGGTCAAACTCGCAATCACCGTAGCCTCTCTTGTGGCGGCGACGATTCTACTCGCGGCGGAGTATCGGCGGCGGAGGAGGAGGAAACAGACATCTTCTCCGAGCTCGTGTTATCTCCATTCCGACATGAAGCCGCAGTTCGGCTTCAAACGCGTCCTTGCGGACAACTCTTACTCTGGATTCAAACACTTGAAGAAGAAGAAGCTCGAGGATGGAGGAGAGAAGCCTTCAAACTCTCATCCGTACGAAAGTGAGATCACTGTGTTGTTAGAGAGTCCTCGTCTTGATGAGTTTGAGTTCTTGAGGGGAGAGTATTCACTGGAGATGAGTGGTTCATACGTGTGGGTTGAGACTGAGTCTGAGTTGAAGAAGCTTGCGGAAACATTGGCGAAAGAGAAAGTTTTTGCGGTTGATACAGAGCAGCATAGTTTGAGATCGTTTCTTGGTTTCACTGCTTTGATTCAGATTTCTACGCAAGAGGAGGATTTTTTGGTGGATACTATTGCGTTACATGATGTGATGAGTATACTTCGTCCTGTTTTTTCCAATCCTGATATTTGTAAGGTGTTTCATGGAGCCGACAACGATGTTATCTGGCTTCAAAGAGACTTCCACATATATGTTGTTAATATGTTTGATACTGCCAAGGCATGTGAGGTGTTGGCAAAGCCTCAAAGGTCACTGGCATATTTACTTGAGTCAGTTTGTGGAGTGTCTACTAACAAATTGCTGCAACGTGAAGACTGGAGACAGCGTCCTCTGTCAGAAGAGATGGTGCGTTATGCCAGAACAGATGCACACTATCTACTCTACATTGCCGATAGTATGACTGCTGAGCTCAAACAACTAGGCATTGAAGATTCATCTAGCACCGATGACAAATTCAGTTTTCTTCTCGAGGCTAGTAGACGCTCAAACATGATCTGTTTACAACTCTACACTAAAGAGACCGAAGATTTTCCCGGGAATGCAGCTGCTTCCTCGTTAATTTATCGTCATTTAAACGGCCATGAAGACAACTCTTCCATCTCCTTGGATCCAAAGTTCCAGGAGCTTGTAAGAGAACTTTGCGCATGGAGAGACTTAATGGCACGGATTCACGATGAAAGCACACGGTATGTCTTGTCTGACCAAGCCGTCATCGCTCTTGCTTCTAACCAGCCAACTACACCTGAGCAAATACATGATTCTATATCTCAAGCTGACTCGGCTTCAGAGTCGGCTGTTATAACTAGTCATCTGGATGACGTTCATCAACTGACTCAACACAAGTTAGGCAAGCTTGACGTTATCTTACCACTAGTCCTCGACAAATGCTTGGGAACAGAAGGAACATGCCCCATCTCCGTCTTCAACTACTCGCTCTTGATCAACTTCAACACAAAGCTAACCACAAACCGCTCTACCCCCAAGAGACGCAATAACCTCAAGAGGTTCACACGGAAGACATCAAGAGACCTCTTCGTCAAGAAATTCTCCTGCAAGGCTCCTGTTTACCACAACTGCAGAATCTACGCCAACGACGGGCGGTTACTATGCTACTGCGATAGAAGAAAGCTAGAATGGTACATGAGCCGTGGTCTTGCCAAACTAGTTGAAGAAGATCCCCTCGCGATAATGCTTCTGTTCGAACCAAAGGGGCGTCCTGAAGACGAAGGGAATGATTTTTACATCCAGAGCAAGAAGAACATTTGCGTTGGGTGTGGCGAAGGGGATCACTATCTTCGTTACAGGATAATACCTTCTTGCTATAGAGTTCATTTCCCTGAGCATTTGAAGAGTCACAGGTCTCATGATATAGTTCTGCTTTGTGTGGATTGTCATGAGGTCGCGCACGCTGCTGCCGAGAGGTATAAGAAAGAAGTGGCTAAGGAGTTTGGGATCCCTCTCTTTGTTCGTAGAGTGCTTGATTCGGTGGAGTGTGAATCATCAGCAGGTGGTGACAGTGAAGATGCAGGTGTGTCTCCGTTGCATCTTAGAACAGCTGCGATGGCGCTGTTGAGGCATGGGAATAGGATGCCATCTAGTCGCCGTGAGGAGTTGTTGCAGACTGTGAAGATGTATTACGGTGGAAGAGAGATATCTGAAGAAGATTTGGAAAAGGCTTTGCTTATTGGGATGAGTCCTCACGAGAGAAGAAAACTCGAAAGGAAGAAAGGTTCGGTAGAAGAACATAGTGAGGAAGCTCCTCCTGGAGGTGATATGAATGGAGAGAGTAGCGTGGTTGGTGATGATAGTGGAGGAGATGGAGCTCCGGAGCTGAATGATACTCAATGTAATGGAAACATATTGCACCAGCAGAACTCGAAGCTCTCTTTGTTGGGACATGGACCGCACGGGAAACAGGTTGTAGAGTATCTTTTGAAGGAGTATGGAGAGGATGGTGTTCGAGATTTCTGTCAGAGATGGAGGAAAGTGTTTGTTGATGCTCTTCATCCTCGCCATTTGCCTGGTGGGTGGGATGTTACTCACAGTGGACGAAGAGACTTTGGCGAGTTCAGCGTTTATAATCCAACAAAGAAAGTCTCCACCGGAAATGAGCTCTAA
Protein:  
MVVNEKVKLAITVASLVAATILLAAEYRRRRRRKQTSSPSSCYLHSDMKPQFGFKRVLADNSYSGFKHLKKKKLEDGGEKPSNSHPYESEITVLLESPRLDEFEFLRGEYSLEMSGSYVWVETESELKKLAETLAKEKVFAVDTEQHSLRSFLGFTALIQISTQEEDFLVDTIALHDVMSILRPVFSNPDICKVFHGADNDVIWLQRDFHIYVVNMFDTAKACEVLAKPQRSLAYLLESVCGVSTNKLLQREDWRQRPLSEEMVRYARTDAHYLLYIADSMTAELKQLGIEDSSSTDDKFSFLLEASRRSNMICLQLYTKETEDFPGNAAASSLIYRHLNGHEDNSSISLDPKFQELVRELCAWRDLMARIHDESTRYVLSDQAVIALASNQPTTPEQIHDSISQADSASESAVITSHLDDVHQLTQHKLGKLDVILPLVLDKCLGTEGTCPISVFNYSLLINFNTKLTTNRSTPKRRNNLKRFTRKTSRDLFVKKFSCKAPVYHNCRIYANDGRLLCYCDRRKLEWYMSRGLAKLVEEDPLAIMLLFEPKGRPEDEGNDFYIQSKKNICVGCGEGDHYLRYRIIPSCYRVHFPEHLKSHRSHDIVLLCVDCHEVAHAAAERYKKEVAKEFGIPLFVRRVLDSVECESSAGGDSEDAGVSPLHLRTAAMALLRHGNRMPSSRREELLQTVKMYYGGREISEEDLEKALLIGMSPHERRKLERKKGSVEEHSEEAPPGGDMNGESSVVGDDSGGDGAPELNDTQCNGNILHQQNSKLSLLGHGPHGKQVVEYLLKEYGEDGVRDFCQRWRKVFVDALHPRHLPGGWDVTHSGRRDFGEFSVYNPTKKVSTGNEL